1VG5 Structural Genomics, Unknown Function date Apr 23, 2004
title Solution Structure Of Rsgi Ruh-014, A Uba Domain From Arabid
authors H.Onuki, Y.Doi-Katayama, F.Hayashi, H.Hirota, S.Yokoyama, Riken S Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Rhomboid Family Protein
Chain: A
Fragment: Uba Domain
Synonym: Rsgi Ruh-014
Engineered: Yes
 Organism_scientific: Arabidopsis Thaliana
Organism_common: Thale Cress
Organism_taxid: 3702
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P030224-40
Other_details: Cell-Free Protein Synthesis (E. Coli)
methodSolution NMR
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (333 Kb) [Save to disk]
  • Biological Unit Coordinates (1vg5.pdb1.gz) 17 Kb
  • CSU: Contacts of Structural Units for 1VG5
  • Original NMR restraints for 1VG5 from PDB
  • Retrieve 1VG5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1VG5 from S2C, [Save to disk]
    • View 1VG5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1VG5
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1VG5, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1vg5a_, region A [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1vg5] [1vg5_A]
  • SWISS-PROT database: [Q8LB17]
  • Domain organization of [Y3846_ARATH] by SWISSPFAM
  • Domain found in 1VG5: [UBA ] by SMART
    • Other resources with information on 1VG5
  • Community annotation for 1VG5 at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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