1VHO Structural Genomics, Unknown Function date Dec 01, 2003
title Crystal Structure Of A Putative Peptidaseendoglucanase
authors Structural Genomix
compound source
Molecule: Endoglucanase
Chain: A
Engineered: Yes
 Organism_scientific: Thermotoga Maritima
Organism_taxid: 2336
Gene: Frvx
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 41 21 2
R_factor 0.212 R_Free 0.245
crystal
cell
length a length b length c angle alpha angle beta angle gamma
120.453 120.453 57.627 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.86 Å
ligand CAC, MSE, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural analysis of a set of proteins resulting from a bacterial genomics project., Badger J, Sauder JM, Adams JM, Antonysamy S, Bain K, Bergseid MG, Buchanan SG, Buchanan MD, Batiyenko Y, Christopher JA, Emtage S, Eroshkina A, Feil I, Furlong EB, Gajiwala KS, Gao X, He D, Hendle J, Huber A, Hoda K, Kearins P, Kissinger C, Laubert B, Lewis HA, Lin J, Loomis K, Lorimer D, Louie G, Maletic M, Marsh CD, Miller I, Molinari J, Muller-Dieckmann HJ, Newman JM, Noland BW, Pagarigan B, Park F, Peat TS, Post KW, Radojicic S, Ramos A, Romero R, Rutter ME, Sanderson WE, Schwinn KD, Tresser J, Winhoven J, Wright TA, Wu L, Xu J, Harris TJ, Proteins 2005 Sep 1;60(4):787-96. PMID:16021622
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (60 Kb) [Save to disk]
  • Biological Unit Coordinates (1vho.pdb1.gz) 55 Kb
  • LPC: Ligand-Protein Contacts for 1VHO
  • CSU: Contacts of Structural Units for 1VHO
  • Likely Quarternary Molecular Structure file(s) for 1VHO
  • Structure Factors (791 Kb)
  • Retrieve 1VHO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1VHO from S2C, [Save to disk]
  • Re-refined 1vho structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1VHO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1VHO
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1VHO, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1vhoa2, region A:3-69,A:153-333 [Jmol] [rasmolscript] [script source]
        - Domain d1vhoa1, region A:70-152 [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1vho] [1vho_A]
  • SWISS-PROT database: [Q9X0D8]
  • Domain organization of [Q9X0D8_THEMA] by SWISSPFAM
    • Other resources with information on 1VHO
  • Community annotation for 1VHO at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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