1VHQ Structural Genomics, Unknown Function date Dec 01, 2003
title Crystal Structure Of Enhancing Lycopene Biosynthesis Protein
authors Structural Genomix
compound source
Molecule: Enhancing Lycopene Biosynthesis Protein 2
Chain: A, B
Synonym: Sigma Cross-Reacting Protein 27a, Scrp-27a
Engineered: Yes
 Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Elbb, Elb2, B3209, Sf3249, S3467
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.220 R_Free 0.263
crystal
cell
length a length b length c angle alpha angle beta angle gamma
75.090 45.208 76.332 90.00 118.78 90.00
method X-Ray Diffractionresolution 1.65 Å
ligand ACT, CSO, MSE enzyme
related structures by homologous chain: 1OY1
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural analysis of a set of proteins resulting from a bacterial genomics project., Badger J, Sauder JM, Adams JM, Antonysamy S, Bain K, Bergseid MG, Buchanan SG, Buchanan MD, Batiyenko Y, Christopher JA, Emtage S, Eroshkina A, Feil I, Furlong EB, Gajiwala KS, Gao X, He D, Hendle J, Huber A, Hoda K, Kearins P, Kissinger C, Laubert B, Lewis HA, Lin J, Loomis K, Lorimer D, Louie G, Maletic M, Marsh CD, Miller I, Molinari J, Muller-Dieckmann HJ, Newman JM, Noland BW, Pagarigan B, Park F, Peat TS, Post KW, Radojicic S, Ramos A, Romero R, Rutter ME, Sanderson WE, Schwinn KD, Tresser J, Winhoven J, Wright TA, Wu L, Xu J, Harris TJ, Proteins 2005 Sep 1;60(4):787-96. PMID:16021622
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (73 Kb) [Save to disk]
  • Biological Unit Coordinates (1vhq.pdb1.gz) 68 Kb
  • LPC: Ligand-Protein Contacts for 1VHQ
  • CSU: Contacts of Structural Units for 1VHQ
  • Likely Quarternary Molecular Structure file(s) for 1VHQ
  • Structure Factors (1156 Kb)
  • Retrieve 1VHQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1VHQ from S2C, [Save to disk]
  • Re-refined 1vhq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1VHQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1VHQ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1VHQ, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1vhqa_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1vhqb_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1vhq] [1vhq_A] [1vhq_B]
  • SWISS-PROT database: [P0ABU5]
  • Domain organization of [ELBB_ECOLI] by SWISSPFAM
    • Other resources with information on 1VHQ
  • Community annotation for 1VHQ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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