1VI7 Structural Genomics, Unknown Function date Dec 01, 2003
title Crystal Structure Of An Hypothetical Protein
authors Structural Genomix
compound source
Molecule: Hypothetical Protein Yigz
Chain: A
Engineered: Yes
 Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Yigz, B3848
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: H 3
R_factor 0.261 R_Free 0.332
crystal
cell
length a length b length c angle alpha angle beta angle gamma
148.749 148.749 35.602 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.80 Å
Gene
Ontology
ChainFunctionProcessComponent
A
  • protein kinase inhibitor act...


    • Primary referenceCrystal structure of YIGZ, a conserved hypothetical protein from Escherichia coli k12 with a novel fold., Park F, Gajiwala K, Eroshkina G, Furlong E, He D, Batiyenko Y, Romero R, Christopher J, Badger J, Hendle J, Lin J, Peat T, Buchanan S, Proteins 2004 May 15;55(3):775-7. PMID:15103642
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (38 Kb) [Save to disk]
  • Biological Unit Coordinates (1vi7.pdb1.gz) 33 Kb
  • CSU: Contacts of Structural Units for 1VI7
  • Likely Quarternary Molecular Structure file(s) for 1VI7
  • Structure Factors (163 Kb)
  • Retrieve 1VI7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1VI7 from S2C, [Save to disk]
  • Re-refined 1vi7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1VI7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1VI7
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1VI7, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1vi7a2, region A:138-208 [Jmol] [rasmolscript] [script source]
        - Domain d1vi7a1, region A:3-137 [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1vi7] [1vi7_A]
  • SWISS-PROT database: [P27862]
  • Domain organization of [YIGZ_ECOLI] by SWISSPFAM
    • Other resources with information on 1VI7
  • Community annotation for 1VI7 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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