1VI9	Transferase	date	Dec 01, 2003
title	Crystal Structure Of Pyridoxamine Kinase
authors	Structural Genomix
compound		source
Molecule: Pyridoxamine Kinase Chain: A, B, C, D Synonym: Pm Kinase Ec: 2.7.1.35 Engineered: Yes		Organism_scientific: Escherichia Coli Organism_taxid: 562 Gene: Pdxy, B1636 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 1 21 1	R_factor 0.198 R_Free 0.256
crystal cell	length a length b length c angle alpha angle beta angle gamma 53.383 92.592 122.237 90.00 99.42 90.00
method	X-Ray Diffraction	resolution	1.96 Å
ligand	BME, CSD, MSE, SO4	enzyme	Transferase E.C.2.7.1.35 BRENDA
related structures	by homologous chain: 1TD2
Gene Ontology	Chain Function Process Component A, D, C, B
Primary reference	Structural analysis of a set of proteins resulting from a bacterial genomics project., Badger J, Sauder JM, Adams JM, Antonysamy S, Bain K, Bergseid MG, Buchanan SG, Buchanan MD, Batiyenko Y, Christopher JA, Emtage S, Eroshkina A, Feil I, Furlong EB, Gajiwala KS, Gao X, He D, Hendle J, Huber A, Hoda K, Kearins P, Kissinger C, Laubert B, Lewis HA, Lin J, Loomis K, Lorimer D, Louie G, Maletic M, Marsh CD, Miller I, Molinari J, Muller-Dieckmann HJ, Newman JM, Noland BW, Pagarigan B, Park F, Peat TS, Post KW, Radojicic S, Ramos A, Romero R, Rutter ME, Sanderson WE, Schwinn KD, Tresser J, Winhoven J, Wright TA, Wu L, Xu J, Harris TJ, Proteins 2005 Sep 1;60(4):787-96. PMID:16021622

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (200 Kb) [Save to disk] Biological Unit Coordinates (1vi9.pdb1.gz) 98 Kb Biological Unit Coordinates (1vi9.pdb2.gz) 99 Kb LPC: Ligand-Protein Contacts for 1VI9 CSU: Contacts of Structural Units for 1VI9 Likely Quarternary Molecular Structure file(s) for 1VI9 Structure Factors (1866 Kb) Retrieve 1VI9 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1VI9 from S2C, [Save to disk] Re-refined 1vi9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1VI9 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1VI9

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1VI9, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1vi9a_, region A [Jmol] [rasmolscript] [script source]     - Domain d1vi9b_, region B [Jmol] [rasmolscript] [script source]     - Domain d1vi9c_, region C [Jmol] [rasmolscript] [script source]     - Domain d1vi9d_, region D [Jmol] [rasmolscript] [script source]

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1vi9_A] [1vi9_B] [1vi9_D] [1vi9] [1vi9_C] SWISS-PROT database: [P77150] Domain organization of [PDXY_ECOLI] by SWISSPFAM

Other resources with information on 1VI9

Community annotation for 1VI9 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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