1VJ9 Hydrolase date Feb 03, 2004
title Urokinase Plasminogen Activator B-Chain-Jt464 Complex
authors A.Schweinitz, T.Steinmetzer, I.J.Banke, M.J.E.Arlt, A.Stuerzebec O.Schuster, A.Geissler, H.Giersiefen, E.Zeslawska, U.Jacob, A.Kr J.Stuerzebecher
compound source
Molecule: Plasminogen Activator, Urokinase
Chain: U
Fragment: B Chain
Ec: 3.4.21.73
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21d
symmetry Space Group: P 21 21 21
R_factor
R_Free 0.247
crystal
cell
length a length b length c angle alpha angle beta angle gamma
53.230 54.900 82.280 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand 5IN, SO4 enzyme Hydrolase E.C.3.4.21.73 BRENDA
related structures by homologous chain: 1LMW, 1SC8
Gene
Ontology
ChainFunctionProcessComponent
U


Primary referenceDesign of novel and selective inhibitors of urokinase-type plasminogen activator with improved pharmacokinetic properties for use as antimetastatic agents., Schweinitz A, Steinmetzer T, Banke IJ, Arlt MJ, Sturzebecher A, Schuster O, Geissler A, Giersiefen H, Zeslawska E, Jacob U, Kruger A, Sturzebecher J, J Biol Chem 2004 Aug 6;279(32):33613-22. Epub 2004 May 18. PMID:15150279
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (47 Kb) [Save to disk]
  • Biological Unit Coordinates (1vj9.pdb1.gz) 43 Kb
  • LPC: Ligand-Protein Contacts for 1VJ9
  • CSU: Contacts of Structural Units for 1VJ9
  • Likely Quarternary Molecular Structure file(s) for 1VJ9
  • Retrieve 1VJ9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1VJ9 from S2C, [Save to disk]
  • View 1VJ9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1VJ9
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1VJ9, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1vj9u_, region U [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1vj9] [1vj9_U]
  • SWISS-PROT database: [P00749]
  • Domain organization of [UROK_HUMAN] by SWISSPFAM
  • Domain found in 1VJ9: [Tryp_SPc ] by SMART
  • Other resources with information on 1VJ9
  • Community annotation for 1VJ9 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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