1VJC	Transferase	date	Feb 03, 2004
title	Structure Of Pig Muscle Pgk Complexed With Mgatp
authors	B.Flachner, Z.Kovari, A.Varga, Z.Gugolya, F.Vonderviszt, G.Naray- M.Vas
compound		source
Molecule: Phosphoglycerate Kinase Chain: A Ec: 2.7.2.3		Organism_scientific: Sus Scrofa Organism_common: Pig Organism_taxid: 9823 Tissue: Muscle
symmetry	Space Group: P 1 21 1	R_factor 0.173 R_Free 0.233
crystal cell	length a length b length c angle alpha angle beta angle gamma 36.200 106.500 51.100 90.00 97.60 90.00
method	X-Ray Diffraction	resolution	2.10 Å
ligand	ATP, MG	enzyme	Transferase E.C.2.7.2.3 BRENDA
related structures	by homologous chain: 1FW8, 1VJD
Gene Ontology	Chain Function Process Component A
Primary reference	Role of Phosphate Chain Mobility of MgATP in Completing the 3-Phosphoglycerate Kinase Catalytic Site: Binding, Kinetic, and Crystallographic Studies with ATP and MgATP., Flachner B, Kovari Z, Varga A, Gugolya Z, Vonderviszt F, Naray-Szabo G, Vas M, Biochemistry 2004 Mar 30;43(12):3436-3449. PMID:15035615

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (68 Kb) [Save to disk] Biological Unit Coordinates (1vjc.pdb1.gz) 64 Kb LPC: Ligand-Protein Contacts for 1VJC CSU: Contacts of Structural Units for 1VJC Likely Quarternary Molecular Structure file(s) for 1VJC Structure Factors (154 Kb) Retrieve 1VJC in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1VJC from S2C, [Save to disk] Re-refined 1vjc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1VJC in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1VJC

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1VJC, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1vjca_, region A [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1vjc] [1vjc_A] SWISS-PROT database: [Q7SIB7] Domain organization of [PGK1_PIG] by SWISSPFAM

Other resources with information on 1VJC

Community annotation for 1VJC at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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