1VJD	Transferase	date	Feb 03, 2004
title	Structure Of Pig Muscle Pgk Complexed With Atp
authors	B.Flachner, Z.Kovari, A.Varga, Z.Gugolya, F.Vonderviszt, G.Naray- M.Vas
compound		source
Molecule: Phosphoglycerate Kinase Chain: A Ec: 2.7.2.3		Organism_scientific: Sus Scrofa Organism_common: Pig Organism_taxid: 9823 Tissue: Muscle
symmetry	Space Group: P 1 21 1	R_factor 0.187 R_Free 0.235
crystal cell	length a length b length c angle alpha angle beta angle gamma 36.200 106.400 51.100 90.00 97.80 90.00
method	X-Ray Diffraction	resolution	1.90 Å
ligand	ATP, PO4	enzyme	Transferase E.C.2.7.2.3 BRENDA
related structures	by homologous chain: 1HDI, 1VJC
Gene Ontology	Chain Function Process Component A
Primary reference	Role of Phosphate Chain Mobility of MgATP in Completing the 3-Phosphoglycerate Kinase Catalytic Site: Binding, Kinetic, and Crystallographic Studies with ATP and MgATP., Flachner B, Kovari Z, Varga A, Gugolya Z, Vonderviszt F, Naray-Szabo G, Vas M, Biochemistry 2004 Mar 30;43(12):3436-3449. PMID:15035615

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (69 Kb) [Save to disk] Biological Unit Coordinates (1vjd.pdb1.gz) 65 Kb LPC: Ligand-Protein Contacts for 1VJD CSU: Contacts of Structural Units for 1VJD Likely Quarternary Molecular Structure file(s) for 1VJD Structure Factors (192 Kb) Retrieve 1VJD in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1VJD from S2C, [Save to disk] Re-refined 1vjd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1VJD in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1VJD

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1VJD, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1vjda_, region A [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1vjd] [1vjd_A] SWISS-PROT database: [Q7SIB7] Domain organization of [PGK1_PIG] by SWISSPFAM

Other resources with information on 1VJD

Community annotation for 1VJD at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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