1VKP	Hydrolase	date	Jun 15, 2004
title	X-Ray Structure Of Gene Product From Arabidopsis Thaliana At Agmatine Iminohydrolase
authors	G.E.Wesenberg, D.W.Smith, G.N.Phillips Jr., C.A.Bingman, S.T.M.A Center For Eukaryotic Structural Genomics (Cesg)
compound		source
Molecule: Agmatine Iminohydrolase Chain: A, B Synonym: Aih, Agmatine Deiminase Ec: 3.5.3.12 Engineered: Yes		Organism_scientific: Arabidopsis Thaliana Organism_common: Thale Cress Organism_taxid: 3702 Gene: At5g08170 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 1 21 1	R_factor 0.146 R_Free 0.174
crystal cell	length a length b length c angle alpha angle beta angle gamma 58.020 115.813 66.634 90.00 97.10 90.00
method	X-Ray Diffraction	resolution	1.53 Å
ligand	EDO, MG, MPO, MSE	enzyme	Hydrolase E.C.3.5.3.12 BRENDA
Gene Ontology	Chain Function Process Component A, B

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (140 Kb) [Save to disk] Biological Unit Coordinates (1vkp.pdb1.gz) 133 Kb LPC: Ligand-Protein Contacts for 1VKP CSU: Contacts of Structural Units for 1VKP Likely Quarternary Molecular Structure file(s) for 1VKP Structure Factors (1574 Kb) Retrieve 1VKP in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1VKP from S2C, [Save to disk] Re-refined 1vkp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1VKP in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1VKP

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1VKP, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1vkpa_, region A [Jmol] [rasmolscript] [script source]     - Domain d1vkpb_, region B [Jmol] [rasmolscript] [script source]

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1vkp_B] [1vkp] [1vkp_A] SWISS-PROT database: [Q8GWW7] Domain organization of [AGUA_ARATH] by SWISSPFAM

Other resources with information on 1VKP

Community annotation for 1VKP at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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