1VLH Crystal structure of Phosphopantetheine adenylyltransferase (TM0741) from Thermotoga maritima at 2.20 A resolution date
authors JCSG, Joint.Center.for.Structural.Genomics.
compound source
symmetry
R_factor
R_Free 0.22687
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.20
ligand MPD, PNS enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (163 Kb) [Save to disk]
  • Biological Unit Coordinates (1vlh.pdb1.gz) 155 Kb
  • LPC: Ligand-Protein Contacts for 1VLH
  • CSU: Contacts of Structural Units for 1VLH
  • Likely Quarternary Molecular Structure file(s) for 1VLH
  • Structure Factors (2091 Kb)
  • Retrieve 1VLH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1VLH from S2C, [Save to disk]
  • Re-refined 1vlh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1VLH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1VLH
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1VLH, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1vlha_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1vlhb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1vlhc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1vlhd_, region D [Jmol] [rasmolscript] [script source]
        - Domain d1vlhe_, region E [Jmol] [rasmolscript] [script source]
        - Domain d1vlhf_, region F [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1vlh_C] [1vlh_D] [1vlh_B] [1vlh_A] [1vlh_F] [1vlh] [1vlh_E]
  • SWISS-PROT database: [Q9WZK0]
  • Domain organization of [COAD_THEMA] by SWISSPFAM
  • Other resources with information on 1VLH
  • Community annotation for 1VLH at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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