1VM1	Hydrolase	date	Aug 27, 2004
title	Structure Of Shv-1 Beta-Lactamase Inhibited By Tazobactam
authors	A.P.Kuzin, M.Nukaga, Y.Nukaga, A.Hujer, R.A.Bonomo, J.R.Knox
compound		source
Molecule: Beta-Lactamase Shv-1 Chain: A Ec: 3.5.2.6 Engineered: Yes		Organism_scientific: Klebsiella Pneumoniae Organism_taxid: 573 Gene: Bla Expression_system: Escherichia Coli Str. K-12 Substr. Dh10b Expression_system_taxid: 316385 Expression_system_strain: Dh10b Expression_system_vector_type: Plasmid Expression_system_plasmid: Pbcsk
symmetry	Space Group: P 21 21 21	R_factor 0.171 R_Free 0.257
crystal cell	length a length b length c angle alpha angle beta angle gamma 49.200 56.100 82.500 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.02 Å
ligand	AKR, MA4, TAZ, TBE BindingDB	enzyme	Hydrolase E.C.3.5.2.6 BRENDA
note	1VM1 supersedes 1G56
related structures	by homologous chain: 1LHY, 1ZG6
Gene Ontology	Chain Function Process Component A
Primary reference	Inhibition of the SHV-1 beta-lactamase by sulfones: crystallographic observation of two reaction intermediates with tazobactam., Kuzin AP, Nukaga M, Nukaga Y, Hujer A, Bonomo RA, Knox JR, Biochemistry 2001 Feb 13;40(6):1861-6. PMID:11327849

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (51 Kb) [Save to disk] Biological Unit Coordinates (1vm1.pdb1.gz) 46 Kb LPC: Ligand-Protein Contacts for 1VM1 CSU: Contacts of Structural Units for 1VM1 Likely Quarternary Molecular Structure file(s) for 1VM1 Retrieve 1VM1 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1VM1 from S2C, [Save to disk]

View 1VM1 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1VM1

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1VM1, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1vm1a_, region A [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1vm1] [1vm1_A] SWISS-PROT database: [P0AD64] [Q9F643] Domain organization of [BLA1_KLEPN] [Q9F643_KLEPN] by SWISSPFAM

Other resources with information on 1VM1

Community annotation for 1VM1 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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