1VM7 Crystal structure of Ribokinase (TM0960) from Thermotoga maritima at 2.15 A resolution date
authors JCSG, Joint.Center.for.Structural.Genomics.
compound source
symmetry
R_factor
R_Free 0.23539
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.15
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (99 Kb) [Save to disk]
  • Biological Unit Coordinates (1vm7.pdb1.gz) 93 Kb
  • CSU: Contacts of Structural Units for 1VM7
  • Likely Quarternary Molecular Structure file(s) for 1VM7
  • Structure Factors (1583 Kb)
  • Retrieve 1VM7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1VM7 from S2C, [Save to disk]
  • Re-refined 1vm7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1VM7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1VM7
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1VM7, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1vm7a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1vm7b_, region B [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1vm7_A] [1vm7] [1vm7_B]
  • SWISS-PROT database: [Q9X055]
  • Domain organization of [Q9X055_THEMA] by SWISSPFAM
  • Other resources with information on 1VM7
  • Community annotation for 1VM7 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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