1VQ3 Crystal structure of Phosphoribosylformylglycinamidine synthase, purS subunit (EC 6.3.5.3) (TM1244) from Thermotoga maritima at 1.90 A resolution date
authors JCSG, Joint.Center.for.Structural.Genomics.
compound source
symmetry
R_factor
R_Free 0.2345
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.90
note 1VQ3 is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceCrystal structure of phosphoribosylformyl-glycinamidine synthase II, PurS subunit (TM1244) from Thermotoga maritima at 1.90 A resolution., Mathews II, Krishna SS, Schwarzenbacher R, McMullan D, Jaroszewski L, Miller MD, Abdubek P, Agarwalla S, Ambing E, Axelrod HL, Canaves JM, Carlton D, Chiu HJ, Clayton T, DiDonato M, Duan L, Elsliger MA, Grzechnik SK, Hale J, Hampton E, Haugen J, Jin KK, Klock HE, Koesema E, Kovarik JS, Kreusch A, Kuhn P, Levin I, Morse AT, Nigoghossian E, Okach L, Oommachen S, Paulsen J, Quijano K, Reyes R, Rife CL, Spraggon G, Stevens RC, van den Bedem H, White A, Wolf G, Xu Q, Hodgson KO, Wooley J, Deacon AM, Godzik A, Lesley SA, Wilson IA, Proteins. 2006 Oct 1;65(1):249-54. PMID:16865708
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (66 Kb) [Save to disk]
  • Biological Unit Coordinates (1vq3.pdb1.gz) 61 Kb
  • Biological Unit Coordinates (1vq3.pdb2.gz) 31 Kb
  • Biological Unit Coordinates (1vq3.pdb3.gz) 31 Kb
  • CSU: Contacts of Structural Units for 1VQ3
  • Likely Quarternary Molecular Structure file(s) for 1VQ3
  • Structure Factors (1412 Kb)
  • Retrieve 1VQ3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1VQ3 from S2C, [Save to disk]
  • Re-refined 1vq3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1VQ3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1VQ3
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1VQ3, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1vq3a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1vq3b_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1vq3c_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1vq3d_, region D [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1vq3_C] [1vq3_A] [1vq3_B] [1vq3_D] [1vq3]
  • SWISS-PROT database: [Q9X0X1]
  • Domain organization of [Q9X0X1_THEMA] by SWISSPFAM
    • Other resources with information on 1VQ3
  • Community annotation for 1VQ3 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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