1VQR Crystal structure of a virulence factor (cj0248) from campylobacter jejuni subsp. jejuni at 2.25 A resolution date
authors JCSG, Joint.Center.for.Structural.Genomics.
compound source
symmetry
R_factor
R_Free 0.23286
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.25
ligand MSE enzyme
Primary referenceCrystal structure of virulence factor CJ0248 from Campylobacter jejuni at 2.25 A resolution reveals a new fold., Xu Q, Schwarzenbacher R, McMullan D, Abdubek P, Agarwalla S, Ambing E, Axelrod H, Biorac T, Canaves JM, Chiu HJ, Deacon AM, DiDonato M, Elsliger MA, Godzik A, Grittini C, Grzechnik SK, Hale J, Hampton E, Han GW, Haugen J, Hornsby M, Jaroszewski L, Klock HE, Koesema E, Kreusch A, Kuhn P, Lesley SA, Miller MD, Moy K, Nigoghossian E, Paulsen J, Quijano K, Reyes R, Rife C, Spraggon G, Stevens RC, van den Bedem H, Velasquez J, White A, Wolf G, Hodgson KO, Wooley J, Wilson IA, Proteins. 2006 Jan 1;62(1):292-6. PMID:16287129
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (179 Kb) [Save to disk]
  • Biological Unit Coordinates (1vqr.pdb1.gz) 47 Kb
  • Biological Unit Coordinates (1vqr.pdb2.gz) 44 Kb
  • Biological Unit Coordinates (1vqr.pdb3.gz) 45 Kb
  • Biological Unit Coordinates (1vqr.pdb4.gz) 43 Kb
  • LPC: Ligand-Protein Contacts for 1VQR
  • CSU: Contacts of Structural Units for 1VQR
  • Likely Quarternary Molecular Structure file(s) for 1VQR
  • Structure Factors (2767 Kb)
  • Retrieve 1VQR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1VQR from S2C, [Save to disk]
  • Re-refined 1vqr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1VQR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1VQR
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1VQR, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1vqra_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1vqrb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1vqrc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1vqrd_, region D [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1vqr_D] [1vqr_A] [1vqr_B] [1vqr] [1vqr_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 1VQR
  • Community annotation for 1VQR at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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