1VR0 Crystal structure of putative 2-phosphosulfolactate phosphatase (15026306) from Clostridium acetobutylicum at 2.6 A resolution date
authors JCSG, Joint.Center.for.Structural.Genomics.
compound source
symmetry
R_factor
R_Free 0.22938
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.49
ligand 3SL, MG, MSE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C, B
  • 2-phosphosulfolactate phosph...


  • Primary referenceCrystal structure of 2-phosphosulfolactate phosphatase (ComB) from Clostridium acetobutylicum at 2.6 A resolution reveals a new fold with a novel active site., DiDonato M, Krishna SS, Schwarzenbacher R, McMullan D, Agarwalla S, Brittain SM, Miller MD, Abdubek P, Ambing E, Axelrod HL, Canaves JM, Chiu HJ, Deacon AM, Duan L, Elsliger MA, Godzik A, Grzechnik SK, Hale J, Hampton E, Haugen J, Jaroszewski L, Jin KK, Klock HE, Knuth MW, Koesema E, Kreusch A, Kuhn P, Lesley SA, Levin I, Morse AT, Nigoghossian E, Okach L, Oommachen S, Paulsen J, Quijano K, Reyes R, Rife CL, Spraggon G, Stevens RC, van den Bedem H, White A, Wolf G, Xu Q, Hodgson KO, Wooley J, Wilson IA, Proteins. 2006 Nov 15;65(3):771-6. PMID:16927339
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (119 Kb) [Save to disk]
  • Biological Unit Coordinates (1vr0.pdb1.gz) 76 Kb
  • Biological Unit Coordinates (1vr0.pdb2.gz) 74 Kb
  • LPC: Ligand-Protein Contacts for 1VR0
  • CSU: Contacts of Structural Units for 1VR0
  • Likely Quarternary Molecular Structure file(s) for 1VR0
  • Structure Factors (2549 Kb)
  • Retrieve 1VR0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1VR0 from S2C, [Save to disk]
  • Re-refined 1vr0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1VR0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1VR0
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1VR0, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1vr0] [1vr0_C] [1vr0_B] [1vr0_A]
  • SWISS-PROT database: [Q97E82]
  • Domain organization of [COMB_CLOAB] by SWISSPFAM
  • Other resources with information on 1VR0
  • Community annotation for 1VR0 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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