1VR2 HUMAN VASCULAR ENDOTHELIAL GROWTH FACTOR RECEPTOR 2 (KDR) KINASE DOMAIN date
authors Mctigue, M., Wickersham, J., Pinko, C., Showalter, R., Parast, C., Tempczyk-Russell, A., Gehring, M., Mroczkowski, B., Kan, C., Villafranca, J., Appelt, K.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.40
related structures by homologous chain: 1Y6A
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of the kinase domain of human vascular endothelial growth factor receptor 2: a key enzyme in angiogenesis., McTigue MA, Wickersham JA, Pinko C, Showalter RE, Parast CV, Tempczyk-Russell A, Gehring MR, Mroczkowski B, Kan CC, Villafranca JE, Appelt K, Structure Fold Des 1999 Mar 15;7(3):319-30. PMID:10368301
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (50 Kb) [Save to disk]
  • Biological Unit Coordinates (1vr2.pdb1.gz) 46 Kb
  • CSU: Contacts of Structural Units for 1VR2
  • Likely Quarternary Molecular Structure file(s) for 1VR2
  • Retrieve 1VR2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1VR2 from S2C, [Save to disk]
  • View 1VR2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1VR2
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1VR2, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1vr2a_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1vr2_A] [1vr2]
  • SWISS-PROT database: [P35968]
  • Domain organization of [VGFR2_HUMAN] by SWISSPFAM
  • Domain found in 1VR2: [TyrKc ] by SMART
  • Other resources with information on 1VR2
  • Community annotation for 1VR2 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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