1VS0	Ligase	date	Jan 27, 2006
title	Crystal Structure Of The Ligase Domain From M. Tuberculosis 2.4a
authors	D.Akey, A.Martins, J.Aniukwu, M.S.Glickman, S.Shuman, J.M.Berger, Structural Genomics Consortium (Tbsgc)
compound		source
Molecule: Putative Dna Ligase-Like Protein Rv0938mt0965 Chain: A, B Fragment: Ligd Ligase Domain Engineered: Yes Other_details: Adenylated Form		Organism_scientific: Mycobacterium Tuberculosis Organism_taxid: 83332 Strain: H37rv Gene: Rv0938, Mt0965 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Plyss Expression_system_vector_type: Plasmid Expression_system_plasmid: Paeb1120 Other_details: Tev Cleavable His Tag
symmetry	Space Group: P 32 2 1	R_factor 0.192 R_Free 0.248
crystal cell	length a length b length c angle alpha angle beta angle gamma 57.102 57.102 368.957 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.40 Å
ligand	APK, CL, MG, MSE, ZN	enzyme
Gene Ontology	Chain Function Process Component A, B
Primary reference	Crystal structure and nonhomologous end joining function of the ligase component of Mycobacterium DNA ligase D., Akey D, Martins A, Aniukwu J, Glickman MS, Shuman S, Berger JM, J Biol Chem. 2006 Feb 13;. PMID:16476729

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (118 Kb) [Save to disk] Biological Unit Coordinates (1vs0.pdb1.gz) 56 Kb Biological Unit Coordinates (1vs0.pdb2.gz) 56 Kb LPC: Ligand-Protein Contacts for 1VS0 CSU: Contacts of Structural Units for 1VS0 Likely Quarternary Molecular Structure file(s) for 1VS0 Structure Factors (210 Kb) Retrieve 1VS0 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1VS0 from S2C, [Save to disk] Re-refined 1vs0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1VS0 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1VS0

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1VS0, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1vs0_B] [1vs0_A] [1vs0] SWISS-PROT database: [P71571] Domain organization of [Y938_MYCTU] by SWISSPFAM

Other resources with information on 1VS0

Community annotation for 1VS0 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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