4V4N Structure of the Methanococcus jannaschii ribosome-SecYEBeta channel complex date
authors Menetret, J.F., Park, E., Gumbart, J.C., Ludtke, S.J., Li, W., Whynot, A., Rapoport, T.A., Akey, C.W.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 9.00
note 4V4N supersedes 1VVK, 3J43, 3J44
Gene
Ontology
ChainFunctionProcessComponent
A5, AK


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AG, B3


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Primary referenceStructure of the SecY channel during initiation of protein translocation., Park E, Menetret JF, Gumbart JC, Ludtke SJ, Li W, Whynot A, Rapoport TA, Akey CW, Nature. 2013 Oct 23. doi: 10.1038/nature12720. PMID:24153188
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1201 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 4V4N
  • Retrieve 4V4N in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4V4N from S2C, [Save to disk]
  • View 4V4N in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4V4N
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4v4n_Ad] [4v4n_BU] [4v4n_BN] [4v4n_BT] [4v4n_AD] [4v4n_BV] [4v4n] [4v4n_AJ] [4v4n_BS] [4v4n_A7] [4v4n_BJ] [4v4n_A5] [4v4n_AN] [4v4n_AZ] [4v4n_B2] [4v4n_BC] [4v4n_Ab] [4v4n_A3] [4v4n_AA] [4v4n_AS] [4v4n_BO] [4v4n_AI] [4v4n_AW] [4v4n_BI] [4v4n_BH] [4v4n_AM] [4v4n_AL] [4v4n_Ai] [4v4n_A1] [4v4n_AH] [4v4n_BR] [4v4n_AB] [4v4n_AK] [4v4n_AO] [4v4n_Ae] [4v4n_AX] [4v4n_Ah] [4v4n_BM] [4v4n_BA] [4v4n_Aa] [4v4n_AF] [4v4n_A8] [4v4n_AQ] [4v4n_AR] [4v4n_BD] [4v4n_Ak] [4v4n_BW] [4v4n_BG] [4v4n_Aj] [4v4n_BQ] [4v4n_AY] [4v4n_BF] [4v4n_BK] [4v4n_Ag] [4v4n_BP] [4v4n_Af] [4v4n_BY] [4v4n_AG] [4v4n_B1] [4v4n_BX] [4v4n_B3] [4v4n_AU] [4v4n_AE] [4v4n_AV] [4v4n_AC] [4v4n_BE] [4v4n_BL] [4v4n_BB] [4v4n_AT] [4v4n_AP]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4V4N: [KH] [KOW] [RL11] [Ribosomal_L14] [Ribosomal_L15e] [Ribosomal_L19e] [Ribosomal_L2] [Ribosomal_L2_C] [Ribosomal_L31e] [Ribosomal_L32e] [Ribosomal_L40e] [Ribosomal_S10] [Ribosomal_S13_N] [Ribosomal_S15] [Ribosomal_S19e] [Ribosomal_S27] [Ribosomal_S3Ae] [Ribosomal_S4] [Ribosomal_S6e] [S4] [TRASH ] by SMART
  • Other resources with information on 4V4N
  • Community annotation for 4V4N at PDBWiki (http://pdbwiki.org)

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