1VYH	Hydrolase	date	Apr 30, 2004
title	Paf-Ah Holoenzyme: Lis1alfa2
authors	C.Tarricone, F.Perrina, S.Monzani, L.Massimiliano, S.Knapp, L.H. Z.S.Derewenda, A.Musacchio
compound		source
Molecule: Platelet-Activating Factor Acetylhydrolase Ib Bet Chain: A, B, E, F, I, J, M, N, Q, R Synonym: Platelet-Activating Factor Acetylhydrolase, Paf Acetylhydrolase 30 Kda Subunit, Paf-Ah 30 Kda Subunit, Paf- Subunit, Pafah Beta Subunit; Ec: 3.1.1.47 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_plasmid: Pgex6p1
Molecule: Platelet-Activating Factor Acetylhydrolase Ib Alp Subunit; Chain: C, D, G, H, K, L, O, P, S, T Fragment: C-Term Beta-Propeller, Residues 1-229 Synonym: Paf Acetylhydrolase 45 Kda Subunit, Paf-Ah 45 Kda Paf-Ah Alpha, Pafah Alpha, Lissencephaly-1 Protein, Lis-1, Kd Subunit; Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: Mouse Organism_taxid: 10090 Organ: Brain Expression_system: Spodoptera Frugiperda Expression_system_taxid: 7108 Expression_system_strain: Sf9 Expression_system_vector_type: Baculovirus Expression_system_plasmid: Pfastbac-Htb
symmetry	Space Group: P 1 21 1	R_factor 0.264 R_Free 0.307
crystal cell	length a length b length c angle alpha angle beta angle gamma 205.770 101.220 246.130 90.00 98.06 90.00
method	X-Ray Diffraction	resolution	3.40 Å
ligand		enzyme	Hydrolase E.C.3.1.1.47 BRENDA
Gene Ontology	Chain Function Process Component F, N, E, Q, M, A, J, B, R, I S, T, K, C, L, O, P, H, D, G chemical synaptic transmissi... retrograde axonal transport
Primary reference	Coupling PAF signaling to dynein regulation: structure of LIS1 in complex with PAF-acetylhydrolase., Tarricone C, Perrina F, Monzani S, Massimiliano L, Kim MH, Derewenda ZS, Knapp S, Tsai LH, Musacchio A, Neuron. 2004 Dec 2;44(5):809-21. PMID:15572112

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (806 Kb) [Save to disk] Biological Unit Coordinates (1vyh.pdb1.gz) 167 Kb Biological Unit Coordinates (1vyh.pdb2.gz) 167 Kb Biological Unit Coordinates (1vyh.pdb3.gz) 167 Kb Biological Unit Coordinates (1vyh.pdb4.gz) 166 Kb Biological Unit Coordinates (1vyh.pdb5.gz) 166 Kb CSU: Contacts of Structural Units for 1VYH Likely Quarternary Molecular Structure file(s) for 1VYH Structure Factors (1085 Kb) Retrieve 1VYH in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1VYH from S2C, [Save to disk] Re-refined 1vyh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1VYH in 3D

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Visual 3D analysis of 1VYH

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1VYH, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1vyh_S] [1vyh_C] [1vyh_J] [1vyh_R] [1vyh_N] [1vyh_T] [1vyh_M] [1vyh_E] [1vyh_P] [1vyh_H] [1vyh_I] [1vyh_L] [1vyh_G] [1vyh_Q] [1vyh_F] [1vyh_A] [1vyh_D] [1vyh_B] [1vyh_K] [1vyh_O] [1vyh] SWISS-PROT database: [P63005] [P68402] Domain organization of [LIS1_MOUSE] [PA1B2_HUMAN] by SWISSPFAM Domains found in 1VYH: [LisH] [WD40 ] by SMART

Other resources with information on 1VYH

Community annotation for 1VYH at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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