1VYV Transport Protein date May 07, 2004
title Beta4 Subunit Of Ca2+ Channel
authors Y.H.Chen, M.H.Li, Y.Zhang, L.L.He, Y.Yamada, A.Fitzmaurice, S.Y H.Zhang, T.Liang, J.Yang
compound source
Molecule: Calcium Channel Beta-4subunit
Chain: A, B
Engineered: Yes
Organism_scientific: Rattus Norvegicus
Organism_common: Rat
Organism_taxid: 10116
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
symmetry Space Group: P 1 21 1
R_factor 0.248 R_Free 0.287
crystal
cell
length a length b length c angle alpha angle beta angle gamma
60.300 83.200 72.300 90.00 94.90 90.00
method X-Ray Diffractionresolution 3.00 Å
ligand MSE enzyme
related structures by homologous chain: 1VYT
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural basis of the alpha1-beta subunit interaction of voltage-gated Ca2+ channels., Chen YH, Li MH, Zhang Y, He LL, Yamada Y, Fitzmaurice A, Shen Y, Zhang H, Tong L, Yang J, Nature 2004 Jun 10;429(6992):675-80. Epub 2004 May 30. PMID:15170217
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (93 Kb) [Save to disk]
  • Biological Unit Coordinates (1vyv.pdb1.gz) 45 Kb
  • Biological Unit Coordinates (1vyv.pdb2.gz) 45 Kb
  • LPC: Ligand-Protein Contacts for 1VYV
  • CSU: Contacts of Structural Units for 1VYV
  • Likely Quarternary Molecular Structure file(s) for 1VYV
  • Structure Factors (233 Kb)
  • Retrieve 1VYV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1VYV from S2C, [Save to disk]
  • Re-refined 1vyv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1VYV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1VYV
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1VYV, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1vyva2, region A:216-402 [Jmol] [rasmolscript] [script source]
        - Domain d1vyva1, region A:71-215 [Jmol] [rasmolscript] [script source]
        - Domain d1vyvb2, region B:216-402 [Jmol] [rasmolscript] [script source]
        - Domain d1vyvb1, region B:71-215 [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1vyv] [1vyv_A] [1vyv_B]
  • SWISS-PROT database: [Q8R0S4] [Q580I4]
  • Domain organization of [CACB4_MOUSE] [Q580I4_HUMAN] by SWISSPFAM
  • Domains found in 1VYV: [GuKc] [SH3 ] by SMART
  • Other resources with information on 1VYV
  • Community annotation for 1VYV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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