1VZK A Thiophene Based Diamidine Forms a "Super" AT Binding Minor Groove Agent date
authors Mallena, S., Lee, M.P.H., Bailly, C., Neidle, S., Kumar, A., Boykin, D.W., Wilson, W.D.
compound source
symmetry
R_factor
R_Free 0.2953
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.77
ligand D1B, MG enzyme
Primary referenceThiophene-based diamidine forms a "super" at binding minor groove agent., Mallena S, Lee MP, Bailly C, Neidle S, Kumar A, Boykin DW, Wilson WD, J Am Chem Soc. 2004 Oct 27;126(42):13659-69. PMID:15493923
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (16 Kb) [Save to disk]
  • Biological Unit Coordinates (1vzk.pdb1.gz) 12 Kb
  • LPC: Ligand-Protein Contacts for 1VZK
  • CSU: Contacts of Structural Units for 1VZK
  • Likely Quarternary Molecular Structure file(s) for 1VZK
  • Structure Factors (55 Kb)
  • Retrieve 1VZK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1VZK from S2C, [Save to disk]
  • Re-refined 1vzk structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1VZK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1VZK
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1VZK, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1vzk] [1vzk_B] [1vzk_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 1VZK
  • Community annotation for 1VZK at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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