1W00 Isomerase date May 30, 2004
title Crystal Structure Of Mutant Enzyme D103l Of Ketosteroid Isomerase From Pseudomonas Putida Biotype B
authors D.S.Jang, H.J.Cha, K.Y.Choi
compound source
Molecule: Steroid Delta-Isomerase
Chain: A, B
Synonym: Delta-5-3-Ketosteroid Isomerase
Ec: 5.3.3.1
Engineered: Yes
Mutation: Yes
Organism_scientific: Pseudomonas Putida
Organism_taxid: 303
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
symmetry Space Group: P 21 21 21
R_factor .231 R_Free .279
crystal
cell
length a length b length c angle alpha angle beta angle gamma
35.651 73.166 95.615 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.2 Å
ligand
enzyme Isomerase E.C.5.3.3.1 BRENDA
related structures by homologous chain: 1DMQ, 1W01
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural double-mutant cycle analysis of a hydrogen bond network in ketosteroid isomerase from Pseudomonas putida biotype B., Jang DS, Cha HJ, Cha SS, Hong BH, Ha NC, Lee JY, Oh BH, Lee HS, Choi KY, Biochem J. 2004 Sep 15;382(Pt 3):967-73. PMID:15228388
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (46 Kb) [Save to disk]
  • Biological Unit Coordinates (1w00.pdb1.gz) 43 Kb
  • CSU: Contacts of Structural Units for 1W00
  • Likely Quarternary Molecular Structure file(s) for 1W00
  • Structure Factors (227 Kb)
  • Retrieve 1W00 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1W00 from S2C, [Save to disk]
  • Re-refined 1w00 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1W00 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1W00
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1W00, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1w00] [1w00_B] [1w00_A]
  • SWISS-PROT database: [P07445]
  • Domain organization of [SDIS_PSEPU] by SWISSPFAM
  • Other resources with information on 1W00
  • Community annotation for 1W00 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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