1W01 Isomerase date May 30, 2004
title Crystal Structure Of Mutant Enzyme Y57fd103l Of Ketosteroid Isomerase From Pseudomonas Putida Biotype B
authors D.S.Jang, H.J.Cha, K.Y.Choi
compound source
Molecule: Steroid Delta-Isomerase
Chain: A, B
Synonym: Delta-5-3-Ketosteroid Isomerase
Ec: 5.3.3.1
Engineered: Yes
Mutation: Yes
Organism_scientific: Pseudomonas Putida
Organism_taxid: 303
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
symmetry Space Group: P 21 21 21
R_factor .219 R_Free .268
crystal
cell
length a length b length c angle alpha angle beta angle gamma
36.496 75.942 92.312 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.2 Å
ligand
enzyme Isomerase E.C.5.3.3.1 BRENDA
related structures by homologous chain: 1K41, 1W00
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural double-mutant cycle analysis of a hydrogen bond network in ketosteroid isomerase from Pseudomonas putida biotype B., Jang DS, Cha HJ, Cha SS, Hong BH, Ha NC, Lee JY, Oh BH, Lee HS, Choi KY, Biochem J. 2004 Sep 15;382(Pt 3):967-73. PMID:15228388
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (45 Kb) [Save to disk]
  • Biological Unit Coordinates (1w01.pdb1.gz) 41 Kb
  • CSU: Contacts of Structural Units for 1W01
  • Likely Quarternary Molecular Structure file(s) for 1W01
  • Structure Factors (134 Kb)
  • Retrieve 1W01 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1W01 from S2C, [Save to disk]
  • Re-refined 1w01 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1W01 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1W01
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1W01, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1w01a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1w01b_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1w01_A] [1w01] [1w01_B]
  • SWISS-PROT database: [P07445]
  • Domain organization of [SDIS_PSEPU] by SWISSPFAM
  • Other resources with information on 1W01
  • Community annotation for 1W01 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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