1W13	Hydrolase	date	Jun 15, 2004
title	Urokinase Type Plasminogen Activator
authors	U.Jacob
compound		source
Molecule: Urokinase-Type Plasminogen Activator Chain: U Fragment: Residues 179-425 Synonym: U-Plasminogen Activator, Upa Ec: 3.4.21.73 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 21 21 21	R_factor 0.201 R_Free 0.230
crystal cell	length a length b length c angle alpha angle beta angle gamma 53.040 54.950 82.320 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.00 Å
ligand	SM1, SO4 BindingDB	enzyme	Hydrolase E.C.3.4.21.73 BRENDA
Gene Ontology	Chain Function Process Component U
Primary reference	Crystals of urokinase type plasminogen activator complexes reveal the binding mode of peptidomimetic inhibitors., Zeslawska E, Jacob U, Schweinitz A, Coombs G, Bode W, Madison E, J Mol Biol. 2003 Apr 18;328(1):109-18. PMID:12684001

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (48 Kb) [Save to disk] Biological Unit Coordinates (1w13.pdb1.gz) 43 Kb LPC: Ligand-Protein Contacts for 1W13 CSU: Contacts of Structural Units for 1W13 Likely Quarternary Molecular Structure file(s) for 1W13 Retrieve 1W13 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1W13 from S2C, [Save to disk]

View 1W13 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1W13

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1W13, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1w13_U] [1w13] SWISS-PROT database: [P00749] Domain organization of [UROK_HUMAN] by SWISSPFAM Domain found in 1W13: [Tryp_SPc ] by SMART

Other resources with information on 1W13

Community annotation for 1W13 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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