1W1J	Oxidoreductase	date	Jun 22, 2004
title	Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol Oxid The505ser Mutant
authors	R.H.Van Den Heuvel
compound		source
Molecule: Vanillyl-Alcohol Oxidase Chain: A, B Synonym: Aryl-Alcohol Oxidase, 4-Allylphenol Oxidase Ec: 1.1.3.13 Engineered: Yes Mutation: Yes Other_details: Covalent Bond Between Fad And His 422		Organism_scientific: Penicillium Simplicissimum Organism_taxid: 69488 Atcc: 90172 Expression_system: Escherichia Coli Expression_system_taxid: 562 Other_details: Fungus
symmetry	Space Group: I 4	R_factor 0.207 R_Free 0.292
crystal cell	length a length b length c angle alpha angle beta angle gamma 129.519 129.519 133.280 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.70 Å
ligand	EUG, FAD	enzyme	Oxidoreductase E.C.1.1.3.13 BRENDA
related structures	by homologous chain: 1AHU, 1W1L
Gene Ontology	Chain Function Process Component A, B
Primary reference	Laboratory-evolved vanillyl-alcohol oxidase produces natural vanillin., van den Heuvel RH, van den Berg WA, Rovida S, van Berkel WJ, J Biol Chem. 2004 Aug 6;279(32):33492-500. Epub 2004 May 28. PMID:15169773

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (180 Kb) [Save to disk] Biological Unit Coordinates (1w1j.pdb1.gz) 173 Kb LPC: Ligand-Protein Contacts for 1W1J CSU: Contacts of Structural Units for 1W1J Likely Quarternary Molecular Structure file(s) for 1W1J Structure Factors (238 Kb) Retrieve 1W1J in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1W1J from S2C, [Save to disk] Re-refined 1w1j structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1W1J in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1W1J

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1W1J, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1w1ja1, region A:274-560 [Jmol] [rasmolscript] [script source]     - Domain d1w1ja2, region A:6-273 [Jmol] [rasmolscript] [script source]     - Domain d1w1jb1, region B:274-560 [Jmol] [rasmolscript] [script source]     - Domain d1w1jb2, region B:6-273 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1w1j_B] [1w1j] [1w1j_A] SWISS-PROT database: [P56216] Domain organization of [VAOX_PENSI] by SWISSPFAM

Other resources with information on 1W1J

Community annotation for 1W1J at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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