1W27 Lyase date Jun 29, 2004
title Phenylalanine Ammonia-Lyase (Pal) From Petroselinum Crispum
authors H.Ritter, G.E.Schulz
compound source
Molecule: Phenylalanine Ammonia-Lyase 1
Chain: A, B
Ec: 4.3.1.5
Engineered: Yes
Organism_scientific: Petroselinum Crispum
Organism_common: Parsley
Organism_taxid: 4043
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector: Pt7-7
Other_details: Synthetic Gene
symmetry Space Group: C 2 2 21
R_factor 0.166 R_Free 0.199
crystal
cell
length a length b length c angle alpha angle beta angle gamma
119.960 160.810 141.330 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand DTT, MDO enzyme Lyase E.C.4.3.1.5 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural basis for the entrance into the phenylpropanoid metabolism catalyzed by phenylalanine ammonia-lyase., Ritter H, Schulz GE, Plant Cell. 2004 Dec;16(12):3426-36. Epub 2004 Nov 17. PMID:15548745
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (234 Kb) [Save to disk]
  • Biological Unit Coordinates (1w27.pdb1.gz) 451 Kb
  • LPC: Ligand-Protein Contacts for 1W27
  • CSU: Contacts of Structural Units for 1W27
  • Likely Quarternary Molecular Structure file(s) for 1W27
  • Structure Factors (2051 Kb)
  • Retrieve 1W27 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1W27 from S2C, [Save to disk]
  • Re-refined 1w27 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1W27 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1W27
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1W27, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1w27a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1w27b_, region B [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1w27_A] [1w27_B] [1w27]
  • SWISS-PROT database: [P24481]
  • Domain organization of [PAL1_PETCR] by SWISSPFAM
  • Other resources with information on 1W27
  • Community annotation for 1W27 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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