1W31 Lyase date Jul 11, 2004
title Yeast 5-Aminolaevulinic Acid Dehydratase 5-Hydroxylaevulinic Complex
authors P.T.Erskine, L.Coates, R.Newbold, A.A.Brindley, F.Stauffer, G.D.E R.Gill, S.P.Wood, M.J.Warren, J.B.Cooper, P.M.Shoolingin-Jordan
compound source
Molecule: Delta-Aminolevulinic Acid Dehydratase
Chain: A
Synonym: 5-Aminolaevulinic Acid Dehydratase, Aladh
Ec: 4.2.1.24
Engineered: Yes
Other_details: Complex With 5-Hydroxylaevulinic Acid
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Strain: Ns1(Jm109pns1)
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: I 4 2 2
R_factor 0.190 R_Free 0.249
crystal
cell
length a length b length c angle alpha angle beta angle gamma
102.570 102.570 168.380 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand SHO, ZN enzyme Lyase E.C.4.2.1.24 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure of yeast 5-aminolaevulinic acid dehydratase complexed with the inhibitor 5-hydroxylaevulinic acid., Erskine PT, Coates L, Newbold R, Brindley AA, Stauffer F, Beaven GD, Gill R, Coker A, Wood SP, Warren MJ, Shoolingin-Jordan PM, Neier R, Cooper JB, Acta Crystallogr D Biol Crystallogr. 2005 Sep;61(Pt 9):1222-6. Epub 2005, Aug 16. PMID:16131755
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (65 Kb) [Save to disk]
  • Biological Unit Coordinates (1w31.pdb1.gz) 465 Kb
  • LPC: Ligand-Protein Contacts for 1W31
  • CSU: Contacts of Structural Units for 1W31
  • Likely Quarternary Molecular Structure file(s) for 1W31
  • Structure Factors (266 Kb)
  • Retrieve 1W31 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1W31 from S2C, [Save to disk]
  • Re-refined 1w31 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1W31 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1W31
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1W31, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1w31_A] [1w31]
  • SWISS-PROT database: [P05373]
  • Domain organization of [HEM2_YEAST] by SWISSPFAM
  • Domain found in 1W31: [ALAD ] by SMART
  • Other resources with information on 1W31
  • Community annotation for 1W31 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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