1W40 Ribosomal Protein date Jul 22, 2004
title T. Celer L30e K9a Variant
authors C.F.Lee, K.M.Lee, S.H.Chan, M.D.Allen, M.Bycroft, K.B.Wong
compound source
Molecule: 50s Ribosomal Protein L30e
Chain: A
Engineered: Yes
Mutation: Yes
 Organism_scientific: Thermococcus Celer
Organism_taxid: 2264
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_variant: De3 Plyss
Expression_system_plasmid: Pet8c
symmetry Space Group: P 1 21 1
R_factor 0.206 R_Free 0.241
crystal
cell
length a length b length c angle alpha angle beta angle gamma
23.215 54.164 34.157 90.00 109.79 90.00
method X-Ray Diffractionresolution 2.03 Å
related structures by homologous chain: 1GO0, 1H7M
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceElectrostatic interactions contribute to reduced heat capacity change of unfolding in a thermophilic ribosomal protein l30e., Lee CF, Allen MD, Bycroft M, Wong KB, J Mol Biol. 2005 Apr 29;348(2):419-31. PMID:15811378
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (19 Kb) [Save to disk]
  • Biological Unit Coordinates (1w40.pdb1.gz) 16 Kb
  • CSU: Contacts of Structural Units for 1W40
  • Likely Quarternary Molecular Structure file(s) for 1W40
  • Structure Factors (70 Kb)
  • Retrieve 1W40 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1W40 from S2C, [Save to disk]
  • Re-refined 1w40 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1W40 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1W40
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1W40, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1w40] [1w40_A]
  • SWISS-PROT database: [P29160]
  • Domain organization of [RL30E_THECE] by SWISSPFAM
    • Other resources with information on 1W40
  • Community annotation for 1W40 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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