1W4U Ligase date Jul 29, 2004
title Nmr Solution Structure Of The Ubiquitin Conjugating Enzyme U
authors K.Houben, C.Dominguez, F.M.A.Van Schaik, H.T.M.Timmers, A.M.J.J. R.Boelens
compound source
Molecule: Ubiquitin-Conjugating Enzyme E2-17 Kda 2
Chain: A
Synonym: Ubch5b, Ubiquitin-Protein Ligase, Ubiquitin Carrie
Ec: 6.3.2.19
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
methodSolution NMR
ligand
enzyme Ligase E.C.6.3.2.19 BRENDA
related structures by homologous chain: 1UR6
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSolution structure of the ubiquitin-conjugating enzyme UbcH5B., Houben K, Dominguez C, van Schaik FM, Timmers HT, Bonvin AM, Boelens R, J Mol Biol. 2004 Nov 19;344(2):513-26. PMID:15522302
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (440 Kb) [Save to disk]
  • Biological Unit Coordinates (1w4u.pdb1.gz) 45 Kb
  • CSU: Contacts of Structural Units for 1W4U
  • Original NMR restraints for 1W4U from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1W4U in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1W4U from S2C, [Save to disk]
  • View 1W4U in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1W4U
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1W4U, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1w4ua_, region A [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1w4u_A] [1w4u]
  • SWISS-PROT database: [P62837]
  • Belongs to the peroxisomal protein importer (ppi) family according to TCDB.
  • Domain organization of [UB2D2_HUMAN] by SWISSPFAM
  • Domain found in 1W4U: [UBCc ] by SMART
  • Other resources with information on 1W4U
  • Community annotation for 1W4U at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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