1W77 Transferase date Aug 30, 2004
title 2c-Methyl-D-Erythritol 4-Phosphate Cytidylyltransferase (Isp Arabidopsis Thaliana
authors M.Gabrielsen, J.Kaiser, F.Rohdich, W.Eisenreich, A.Bacher, C.S.Bo W.N.Hunter
compound source
Molecule: 2c-Methyl-D-Erythritol 4-Phosphate Cytidylyltrans
Chain: A
Fragment: Cytidyltransferase Domain, Residues 76-302
Synonym: 4-Diphosphocytidyl-2c-Methyl-D-Erythritol Synthase Sugar Nucleotide Phosphorylase;
Ec: 2.7.7.60
Engineered: Yes
Mutation: Yes
Other_details: Chloroplast Targeting Sequence Removed, Comp Starts At Residue 75
Organism_scientific: Arabidopsis Thaliana
Organism_common: Mouse-Ear Cress
Organism_taxid: 3702
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: M15(Prep4)
Expression_system_plasmid: Pnco113
symmetry Space Group: H 3 2
R_factor 0.232 R_Free 0.349
crystal
cell
length a length b length c angle alpha angle beta angle gamma
74.496 74.496 223.026 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.00 Å
ligand C5P, CD, CU enzyme Transferase E.C.2.7.7.60 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe crystal structure of a plant 2C-methyl-D-erythritol 4-phosphate cytidylyltransferase exhibits a distinct quaternary structure compared to bacterial homologues and a possible role in feedback regulation for cytidine monophosphate., Gabrielsen M, Kaiser J, Rohdich F, Eisenreich W, Laupitz R, Bacher A, Bond CS, Hunter WN, FEBS J. 2006 Mar;273(5):1065-73. PMID:16478479
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (45 Kb) [Save to disk]
  • Biological Unit Coordinates (1w77.pdb1.gz) 75 Kb
  • LPC: Ligand-Protein Contacts for 1W77
  • CSU: Contacts of Structural Units for 1W77
  • Likely Quarternary Molecular Structure file(s) for 1W77
  • Structure Factors (227 Kb)
  • Retrieve 1W77 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1W77 from S2C, [Save to disk]
  • Re-refined 1w77 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1W77 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1W77
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1W77, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1w77] [1w77_A]
  • SWISS-PROT database: [P69834]
  • Domain organization of [ISPD_ARATH] by SWISSPFAM
  • Other resources with information on 1W77
  • Community annotation for 1W77 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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