1W83 Kinase Inhibitor date Sep 16, 2004
title P38 Kinase Crystal Structure In Complex With Small Molecule
authors J.Tickle, H.Jhoti, A.Cleasby, L.Devine
compound source
Molecule: Mitogen-Activated Protein Kinase 14
Chain: A
Synonym: P38 Map Kinase
Ec: 2.7.1.37
Engineered: Yes
Other_details: Kinase Domain
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
symmetry Space Group: P 21 21 21
R_factor 0.228 R_Free 0.322
crystal
cell
length a length b length c angle alpha angle beta angle gamma
45.681 86.101 126.079 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand L11 BindingDB enzyme Transferase E.C.2.7.1.37 BRENDA
related structures by homologous chain: 1DI9, 1KV1
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceIdentification of novel p38alpha MAP kinase inhibitors using fragment-based lead generation., Gill AL, Frederickson M, Cleasby A, Woodhead SJ, Carr MG, Woodhead AJ, Walker MT, Congreve MS, Devine LA, Tisi D, O'Reilly M, Seavers LC, Davis DJ, Curry J, Anthony R, Padova A, Murray CW, Carr RA, Jhoti H, J Med Chem. 2005 Jan 27;48(2):414-26. PMID:15658855
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (71 Kb) [Save to disk]
  • Biological Unit Coordinates (1w83.pdb1.gz) 66 Kb
  • LPC: Ligand-Protein Contacts for 1W83
  • CSU: Contacts of Structural Units for 1W83
  • Likely Quarternary Molecular Structure file(s) for 1W83
  • Retrieve 1W83 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1W83 from S2C, [Save to disk]
  • View 1W83 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1W83
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1W83, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1w83] [1w83_A]
  • SWISS-PROT database: [Q16539]
  • Domain organization of [MK14_HUMAN] by SWISSPFAM
  • Domain found in 1W83: [S_TKc ] by SMART
  • Other resources with information on 1W83
  • Community annotation for 1W83 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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