1WB4 Hydrolase date Oct 30, 2004
title S954a Mutant Of The Feruloyl Esterase Module From Clostridiu Thermocellum Complexed With Sinapinate
authors N.Tarbouriech, J.A.Prates, C.Fontes, G.J.Davies
compound source
Molecule: Endo-1,4-Beta-Xylanase Y
Chain: A, B
Fragment: Feruloyl Esterase Domain, Residues 792-1077
Synonym: Xylanase Y, Xyly, 1,4-Beta-D-Xylan Xylanohydrolase Xylanase Xyn10b;
Ec: 3.2.1.8
Engineered: Yes
Mutation: Yes
Organism_scientific: Clostridium Thermocellum
Organism_taxid: 1515
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_plasmid: Pet22b
symmetry Space Group: P 21 21 21
R_factor 0.111 R_Free 0.134
crystal
cell
length a length b length c angle alpha angle beta angle gamma
65.066 108.405 113.180 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.40 Å
ligand ACY, CD, GOL, SXX enzyme Hydrolase E.C.3.2.1.8 BRENDA
related structures by homologous chain: 1WB5
Primary referenceMolecular determinants of substrate specificity in the feruloyl esterase module of xylanase 10B from Clostridium thermocellum., Tarbouriech N, Prates JA, Fontes CM, Davies GJ, Acta Crystallogr D Biol Crystallogr. 2005 Feb;61(Pt 2):194-7. Epub 2005, Jan 19. PMID:15681871
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (228 Kb) [Save to disk]
  • Biological Unit Coordinates (1wb4.pdb1.gz) 112 Kb
  • Biological Unit Coordinates (1wb4.pdb2.gz) 111 Kb
  • LPC: Ligand-Protein Contacts for 1WB4
  • CSU: Contacts of Structural Units for 1WB4
  • Likely Quarternary Molecular Structure file(s) for 1WB4
  • Structure Factors (2038 Kb)
  • Retrieve 1WB4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1WB4 from S2C, [Save to disk]
  • Re-refined 1wb4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1WB4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1WB4
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Conformational Epitope Prediction for 1WB4 1WB4A 1WB4B from the CEP Server.
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1WB4, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1wb4_B] [1wb4_A] [1wb4]
  • SWISS-PROT database: [P51584]
  • Domain organization of [XYNY_CLOTM] by SWISSPFAM
  • Other resources with information on 1WB4
  • Community annotation for 1WB4 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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