1WBM Hydrolase Inhibitor date Nov 02, 2004
title Hiv-1 Protease In Complex With Symmetric Inhibitor, Bea450
authors J.Lindberg, T.Unge
compound source
Molecule: Pol Protein (Fragment)
Chain: A, B
Fragment: Residues 1-99
Synonym: Hiv-1 Protease
Engineered: Yes
Organism_scientific: Human Immunodeficiency Virus 1
Organism_taxid: 11676
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 2
R_factor 0.217 R_Free 0.244
crystal
cell
length a length b length c angle alpha angle beta angle gamma
58.835 86.472 46.997 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand BLL BindingDB enzyme
related structures by homologous chain: 1MRW, 1NPV
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (38 Kb) [Save to disk]
  • Biological Unit Coordinates (1wbm.pdb1.gz) 34 Kb
  • LPC: Ligand-Protein Contacts for 1WBM
  • CSU: Contacts of Structural Units for 1WBM
  • Likely Quarternary Molecular Structure file(s) for 1WBM
  • Structure Factors (117 Kb)
  • Retrieve 1WBM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1WBM from S2C, [Save to disk]
  • Re-refined 1wbm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1WBM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1WBM
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1WBM, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1wbma_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1wbmb_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1wbm] [1wbm_B] [1wbm_A]
  • SWISS-PROT database: [Q8Q3H0]
  • Domain organization of [Q8Q3H0_9HIV1] by SWISSPFAM
  • Other resources with information on 1WBM
  • Community annotation for 1WBM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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