1WBO Transferase date Nov 04, 2004
title Fragment Based P38 Inhibitors
authors A.Cleasby, L.Devine, A.Gill, H.Jhoti
compound source
Molecule: Mitogen-Activated Protein Kinase 14
Chain: A
Synonym: P38 Alpha Map Kinase, Mitogen-Activated Protein Kinase P38 Alpha, Map Kinase P38alpha, Cytokine Suppressive Anti-Inflammatory Drug Binding Protein, Csaid Binding Protein, Csbp, Max-Interacting Protein 2, Map Kinase Mxi2, Sapk2a;
Ec: 2.7.1.37
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
symmetry Space Group: P 21 21 21
R_factor 0.16731 R_Free 0.21956
crystal
cell
length a length b length c angle alpha angle beta angle gamma
45.746 84.716 126.759 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.16 Å
ligand 2CH enzyme Transferase E.C.2.7.1.37 BRENDA
related structures by homologous chain: 1P38, 1W82
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceFragment-based lead discovery using X-ray crystallography., Hartshorn MJ, Murray CW, Cleasby A, Frederickson M, Tickle IJ, Jhoti H, J Med Chem. 2005 Jan 27;48(2):403-13. PMID:15658854
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (70 Kb) [Save to disk]
  • Biological Unit Coordinates (1wbo.pdb1.gz) 65 Kb
  • LPC: Ligand-Protein Contacts for 1WBO
  • CSU: Contacts of Structural Units for 1WBO
  • Likely Quarternary Molecular Structure file(s) for 1WBO
  • Retrieve 1WBO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1WBO from S2C, [Save to disk]
  • View 1WBO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1WBO
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1WBO, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1wbo] [1wbo_A]
  • SWISS-PROT database: [Q16539]
  • Domain organization of [MK14_HUMAN] by SWISSPFAM
  • Domain found in 1WBO: [S_TKc ] by SMART
  • Other resources with information on 1WBO
  • Community annotation for 1WBO at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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