1WBP Transferase date Nov 04, 2004
title Srpk1 Bound To 9mer Docking Motif Peptide
authors J.C.Ngo, J.Gullinsgrud, S.Chakrabarti, B.Nolen, B.E.Aubol, X.D.F J.A.Adams, J.A.Mccammon, G.Ghosh
compound source
Molecule: Serinethreonine-Protein Kinase Sprk1
Chain: A
Fragment: Residues 42-256 And 474-655
Synonym: Srpk1, Srpk1a Protein Kinase, Serinearginine- Ric Specific Kinase 1, Sr-Protein-Specific Kinase 1, Sfrs Prote 1;
Ec: 2.7.1.37
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector: Pet15b
Expression_system_plasmid: Pet15b

Molecule: Membrane-Associated Guanylate Kinase, Ww And Pdz Containing Protein 1;
Chain: B
Fragment: Residues 1382-1390
Synonym: Atrophin-1-Interacting Protein 3,Aip-3,Bai1-Associ Protein 1,Bap-1,Membrane-Associated Guanylate Kinase Invert 1,Trinucleotide Repeat-Containing Gene 19 Protein, Ww Domai Containing Protein 3,Wwp3,9-Mer Peptide;
Engineered: Yes
Other_details: 9 Mer Peptide Rrrersptr Bound To A Groove Fo The Map Kinase Insert, Helix Af And Helix Ag

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 65 2 2
R_factor 0.228 R_Free 0.247
crystal
cell
length a length b length c angle alpha angle beta angle gamma
78.680 78.680 310.540 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.40 Å
ligand ACT, ADP enzyme Transferase E.C.2.7.1.37 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceInterplay between SRPK and Clk/Sty kinases in phosphorylation of the splicing factor ASF/SF2 is regulated by a docking motif in ASF/SF2., Ngo JC, Chakrabarti S, Ding JH, Velazquez-Dones A, Nolen B, Aubol BE, Adams JA, Fu XD, Ghosh G, Mol Cell. 2005 Oct 7;20(1):77-89. PMID:16209947
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (65 Kb) [Save to disk]
  • Biological Unit Coordinates (1wbp.pdb1.gz) 60 Kb
  • LPC: Ligand-Protein Contacts for 1WBP
  • CSU: Contacts of Structural Units for 1WBP
  • Likely Quarternary Molecular Structure file(s) for 1WBP
  • Retrieve 1WBP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1WBP from S2C, [Save to disk]
  • View 1WBP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1WBP
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1WBP, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1wbp_A] [1wbp_B] [1wbp]
  • SWISS-PROT database: [Q96SB4]
  • Domain organization of [SRPK1_HUMAN] by SWISSPFAM
  • Domain found in 1WBP: [STYKc ] by SMART
  • Other resources with information on 1WBP
  • Community annotation for 1WBP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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