1WBS Transferase date Nov 05, 2004
title Identification Of Novel P38 Alpha Map Kinase Inhibitors Using Fragment-Based Lead Generation.
authors J.Tickle, A.Cleasby, L.A.Devine, H.Jhoti
compound source
Molecule: Mitogen-Activated Protein Kinase 14
Chain: A
Fragment: Kinase Domain, Residues 1-360
Synonym: Mitogen-Activated Protein Kinase P38alpha, Map Kinase P38alpha, Cytokine Suppressive Anti-Inflammatory Drug Binding Protein, Csaid Binding Protein, Csbp, Max-Interacting Protein 2, Map Kinase Mxi2, Sapk2a;
Ec: 2.7.1.37
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
symmetry Space Group: P 21 21 21
R_factor 0.191 R_Free 0.234
crystal
cell
length a length b length c angle alpha angle beta angle gamma
45.775 85.305 126.639 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.8 Å
ligand GOL, LI2 BindingDB enzyme Transferase E.C.2.7.1.37 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceIdentification of novel p38alpha MAP kinase inhibitors using fragment-based lead generation., Gill AL, Frederickson M, Cleasby A, Woodhead SJ, Carr MG, Woodhead AJ, Walker MT, Congreve MS, Devine LA, Tisi D, O'Reilly M, Seavers LC, Davis DJ, Curry J, Anthony R, Padova A, Murray CW, Carr RA, Jhoti H, J Med Chem. 2005 Jan 27;48(2):414-26. PMID:15658855
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (72 Kb) [Save to disk]
  • Biological Unit Coordinates (1wbs.pdb1.gz) 66 Kb
  • LPC: Ligand-Protein Contacts for 1WBS
  • CSU: Contacts of Structural Units for 1WBS
  • Likely Quarternary Molecular Structure file(s) for 1WBS
  • Retrieve 1WBS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1WBS from S2C, [Save to disk]
  • View 1WBS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1WBS
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1WBS, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1wbs] [1wbs_A]
  • SWISS-PROT database: [Q16539]
  • Domain organization of [MK14_HUMAN] by SWISSPFAM
  • Domain found in 1WBS: [S_TKc ] by SMART
  • Other resources with information on 1WBS
  • Community annotation for 1WBS at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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