1WCJ Structural Genomics, Unknown Function date Nov 17, 2004
title Conserved Hypothetical Protein Tm0487 From Thermotoga Maritima
authors M.S.Almeida, W.Peti, T.Herrmann, K.Wuthrich, Joint Center For Structural Genomics (Jcsg)
compound source
Molecule: Hypothetical Protein Tm0487
Chain: A
Fragment: Residues 2-104
Engineered: Yes
Other_details: Conformer With The Lowest R.M.S.D. To The Mean Structure.
 Organism_scientific: Thermotoga Maritima
Organism_taxid: 2336
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector: Pet
methodSolution NMR
related structures by homologous chain: 1UWD
Primary referenceNMR structure of the conserved hypothetical protein TM0487 from Thermotoga maritima: implications for 216 homologous DUF59 proteins., Almeida MS, Herrmann T, Peti W, Wilson IA, Wuthrich K, Protein Sci. 2005 Nov;14(11):2880-6. Epub 2005 Sep 30. PMID:16199668
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (28 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1WCJ
  • Original NMR restraints for 1WCJ from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1WCJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1WCJ from S2C, [Save to disk]
    • View 1WCJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1WCJ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1WCJ, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1wcja_, region A [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1wcj_A] [1wcj]
  • SWISS-PROT database: [Q9WYV7]
  • Domain organization of [Q9WYV7_THEMA] by SWISSPFAM
    • Other resources with information on 1WCJ
  • Community annotation for 1WCJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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