1WCZ Hydrolase date May 10, 2004
title Crystal Structure Of An Alkaline Form Of V8 Protease From Staphylococcus Aureus
authors K.Yamada, M.Ohta, T.Hasegawa, K.Torii, M.Murakami, K.Kouyama
compound source
Molecule: Glutamyl Endopeptidase
Chain: A
Synonym: V8 Protease, Staphylococcal Serine Proteinase, V8 Proteinase, Endoproteinase Glu-C;
Ec: 3.4.21.19
 Organism_scientific: Staphylococcus Aureus
Organism_taxid: 1280
Strain: V8
symmetry Space Group: P 65 2 2
R_factor 0.205 R_Free 0.221
crystal
cell
length a length b length c angle alpha angle beta angle gamma
61.290 61.290 221.130 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.00 Å
ligand ZN enzyme Hydrolase E.C.3.4.21.19 BRENDA
related structures by homologous chain: 1QY6
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (41 Kb) [Save to disk]
  • Biological Unit Coordinates (1wcz.pdb1.gz) 36 Kb
  • LPC: Ligand-Protein Contacts for 1WCZ
  • CSU: Contacts of Structural Units for 1WCZ
  • Likely Quarternary Molecular Structure file(s) for 1WCZ
  • Structure Factors (200 Kb)
  • Retrieve 1WCZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1WCZ from S2C, [Save to disk]
  • Re-refined 1wcz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1WCZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1WCZ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1WCZ, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1wcza_, region A [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1wcz] [1wcz_A]
  • SWISS-PROT database: [P0C1U8]
  • Domain organization of [SSPA_STAAU] by SWISSPFAM
  • Domain found in 1WCZ: [Tryp_SPc ] by SMART
    • Other resources with information on 1WCZ
  • Community annotation for 1WCZ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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