1WFK Unknown Function date May 26, 2004
title Fyve Domain Of Fyve Domain Containing 19 Protein From Mus Mu
authors T.Nagashima, F.Hayashi, S.Yokoyama, Riken Structural Genomicsp Initiative (Rsgi)
compound source
Molecule: Zinc Finger, Fyve Domain Containing 19
Chain: A
Fragment: Fyve Domain
Engineered: Yes
 Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Gene: Riken Cdna 1500041l05
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P040216-61
Other_details: Cell-Free Protein Synthesis
methodSolution NMR
ligand ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (429 Kb) [Save to disk]
  • Biological Unit Coordinates (1wfk.pdb1.gz) 21 Kb
  • LPC: Ligand-Protein Contacts for 1WFK
  • CSU: Contacts of Structural Units for 1WFK
  • Original NMR restraints for 1WFK from PDB
  • Retrieve 1WFK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1WFK from S2C, [Save to disk]
    • View 1WFK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1WFK
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1WFK, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1wfka_, region A [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1wfk_A] [1wfk]
  • SWISS-PROT database: [Q9DAZ9]
  • Domain organization of [ZFY19_MOUSE] by SWISSPFAM
  • Domains found in 1WFK: [FYVE] [RING ] by SMART
    • Other resources with information on 1WFK
  • Community annotation for 1WFK at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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