1WGD Membrane Protein date May 28, 2004
title Solution Structure Of The Ubl-Domain Of Herp
authors T.Nakanishi, S.Koshiba, M.Inoue, T.Kigawa, S.Yokoyama, Riken Stru Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Homocysteine-Responsive Endoplasmic Reticulum-Res Ubiquitin-Like Domain Member 1 Protein;
Chain: A
Fragment: Ubl-Domain
Synonym: Homocysteine-Responsive Endoplasmic Reticulum Resi Protein, Herp, Methyl Methanesulfonate (Mmf)-Inducible Frag Protein 1;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Kazusa Cdna Ha00594
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P030609-57
Other_details: Cell-Free Protein Synthesis
methodSolution NMR
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (494 Kb) [Save to disk]
  • Biological Unit Coordinates (1wgd.pdb1.gz) 24 Kb
  • CSU: Contacts of Structural Units for 1WGD
  • Retrieve 1WGD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1WGD from S2C, [Save to disk]
    • View 1WGD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1WGD
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1WGD, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1wgda_, region A [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1wgd] [1wgd_A]
  • SWISS-PROT database: [Q15011]
  • Domain organization of [HERP1_HUMAN] by SWISSPFAM
  • Domain found in 1WGD: [UBQ ] by SMART
    • Other resources with information on 1WGD
  • Community annotation for 1WGD at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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