1WGY Signaling Protein date May 28, 2004
title Ra Domain Of Guanine Nucleotide Exchange Factor For Rap1
authors T.Nagashima, N.Tochio, T.Kigawa, F.Hayashi, S.Yokoyama, Riken Str Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Rap Guanine Nucleotide Exchange Factor 5
Chain: A
Fragment: Ra Domain
Synonym: Guanine Nucleotide Exchange Factor For Rap1, Relat Epac, Repac, M-Ras-Regulated Rap Gef, Mr-Gef;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Kazusa Cdna Ha06833
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P030804-93
Other_details: Cell-Free Protein Synthesis
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (525 Kb) [Save to disk]
  • Biological Unit Coordinates (1wgy.pdb1.gz) 26 Kb
  • CSU: Contacts of Structural Units for 1WGY
  • Original NMR restraints for 1WGY from PDB
  • Retrieve 1WGY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1WGY from S2C, [Save to disk]
  • View 1WGY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1WGY
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1WGY, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1wgya_, region A [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1wgy_A] [1wgy]
  • SWISS-PROT database: [Q92565]
  • Domain organization of [RPGF5_HUMAN] by SWISSPFAM
  • Other resources with information on 1WGY
  • Community annotation for 1WGY at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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