1WHC Structural Genomics, Unknown Function date May 28, 2004
title Solution Structure Of Rsgi Ruh-027, A Uba Domain From Mouse
authors H.Onuki, Y.Doi-Katayama, H.Hirota, T.Tomizawa, S.Koshiba, T.Kigaw S.Yokoyama, Riken Structural Genomicsproteomics Initiative
compound source
Molecule: Ubaubx 33.3 Kda Protein
Chain: A
Fragment: Uba Domain
Synonym: Rsgi Ruh-027
Engineered: Yes
 Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Gene: Bc006701
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P030324-26
Other_details: Cell-Free Protein Synthesis (E. Coli)
methodSolution NMR
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (296 Kb) [Save to disk]
  • Biological Unit Coordinates (1whc.pdb1.gz) 15 Kb
  • CSU: Contacts of Structural Units for 1WHC
  • Retrieve 1WHC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1WHC from S2C, [Save to disk]
    • View 1WHC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1WHC
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1WHC, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1whca_, region A [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1whc] [1whc_A]
  • SWISS-PROT database: [Q922Y1]
  • Domain organization of [UBXN1_MOUSE] by SWISSPFAM
  • Domain found in 1WHC: [UBA ] by SMART
    • Other resources with information on 1WHC
  • Community annotation for 1WHC at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science