1WI2 Structural Genomics, Unknown Function date May 28, 2004
title Solution Structure Of The Pdz Domain From Riken Cdna 2700099
authors K.Seimiya, T.Tomizawa, T.Kigawa, M.Yoshida, F.Hayashi, S.Yokoyama Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Riken Cdna 2700099c19
Chain: A
Fragment: Pdz Domain
Engineered: Yes
 Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Gene: Riken Cdna 2700099c19
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P030203-31
Other_details: Cell-Free Protein Synthesis
methodSolution NMR
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (484 Kb) [Save to disk]
  • Biological Unit Coordinates (1wi2.pdb1.gz) 24 Kb
  • CSU: Contacts of Structural Units for 1WI2
  • Original NMR restraints for 1WI2 from PDB
  • Retrieve 1WI2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1WI2 from S2C, [Save to disk]
    • View 1WI2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1WI2
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1WI2, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1wi2a_, region A [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1wi2] [1wi2_A]
  • SWISS-PROT database: [Q9CZG9]
  • Domain organization of [PDZ11_MOUSE] by SWISSPFAM
  • Domain found in 1WI2: [PDZ ] by SMART
    • Other resources with information on 1WI2
  • Community annotation for 1WI2 at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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