1WJ2 Dna Binding Protein date May 28, 2004
title Solution Structure Of The C-Terminal Wrky Domain Of Atwrky4
authors K.Yamasaki, M.Inoue, T.Kigawa, S.Yokoyama, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Probable Wrky Transcription Factor 4
Chain: A
Fragment: C-Terminal Wrky Domain
Synonym: Wrky Dna-Binding Protein 4, Wrky4
Engineered: Yes
 Organism_scientific: Arabidopsis Thaliana
Organism_common: Thale Cress
Organism_taxid: 3702
Gene: Wrky4
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pcr2.1
Other_details: Cell-Free Synthesis
methodSolution NMR
ligand ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSolution structure of an Arabidopsis WRKY DNA binding domain., Yamasaki K, Kigawa T, Inoue M, Tateno M, Yamasaki T, Yabuki T, Aoki M, Seki E, Matsuda T, Tomo Y, Hayami N, Terada T, Shirouzu M, Tanaka A, Seki M, Shinozaki K, Yokoyama S, Plant Cell 2005 Mar;17(3):944-56. Epub 2005 Feb 10. PMID:15705956
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (379 Kb) [Save to disk]
  • Biological Unit Coordinates (1wj2.pdb1.gz) 19 Kb
  • LPC: Ligand-Protein Contacts for 1WJ2
  • CSU: Contacts of Structural Units for 1WJ2
  • Original NMR restraints for 1WJ2 from PDB
  • Retrieve 1WJ2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1WJ2 from S2C, [Save to disk]
    • View 1WJ2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1WJ2
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1WJ2, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1wj2a_, region A [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1wj2_A] [1wj2]
  • SWISS-PROT database: [Q9XI90]
  • Domain organization of [WRKY4_ARATH] by SWISSPFAM
  • Domain found in 1WJ2: [WRKY ] by SMART
    • Other resources with information on 1WJ2
  • Community annotation for 1WJ2 at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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