1WMY Sugar Binding Protein date Jul 22, 2004
title Crystal Structure Of C-Type Lectin Cel-I From Cucumaria Echi
authors H.Sugawara, M.Kusunoki, G.Kurisu, T.Fujimoto, H.Aoyagi, T.Hatakey
compound source
Molecule: Lectin Cel-I, N-Acetyl-D-Galactosamine-Specific C
Chain: A, B
Synonym: C-Type Lectin, Cel-I
 Organism_scientific: Cucumaria Echinata
Organism_taxid: 40245
symmetry Space Group: C 1 2 1
R_factor 0.138 R_Free 0.179
crystal
cell
length a length b length c angle alpha angle beta angle gamma
92.380 69.940 76.690 90.00 136.46 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand CA, MPD enzyme
related structures by homologous chain: 1WMZ
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCharacteristic recognition of N-acetylgalactosamine by an invertebrate C-type lectin, CEL-I, revealed by X-ray crystallographic analysis., Sugawara H, Kusunoki M, Kurisu G, Fujimoto T, Aoyagi H, Hatakeyama T, J Biol Chem 2004 Aug 19;. PMID:15319425
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (102 Kb) [Save to disk]
  • Biological Unit Coordinates (1wmy.pdb1.gz) 96 Kb
  • Biological Unit Coordinates (1wmy.pdb2.gz) 189 Kb
  • LPC: Ligand-Protein Contacts for 1WMY
  • CSU: Contacts of Structural Units for 1WMY
  • Likely Quarternary Molecular Structure file(s) for 1WMY
  • Structure Factors (176 Kb)
  • Retrieve 1WMY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1WMY from S2C, [Save to disk]
  • Re-refined 1wmy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1WMY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1WMY
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1WMY, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1wmya_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1wmyb_, region B [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1wmy_B] [1wmy] [1wmy_A]
  • SWISS-PROT database: [Q7M462]
  • Domain organization of [Q7M462_CUCEC] by SWISSPFAM
  • Domain found in 1WMY: [CLECT ] by SMART
    • Other resources with information on 1WMY
  • Community annotation for 1WMY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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