1WP1 Membrane Protein date Aug 28, 2004
title Crystal Structure Of The Drug-Discharge Outer Membrane Prote
authors H.Akama, M.Kanemaki, M.Yoshimura, T.Tsukihara, T.Kashiwagi, S.Nar A.Nakagawa, T.Nakae
compound source
Molecule: Outer Membrane Protein Oprm
Chain: A, B
Synonym: Drug-Discharge Outer Membrane Protein Oprm
Engineered: Yes
 Organism_scientific: Pseudomonas Aeruginosa
Organism_taxid: 287
Gene: Oprm
Expression_system: Pseudomonas Aeruginosa
Expression_system_taxid: 287
Expression_system_strain: Tnp072
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmmb67eh
symmetry Space Group: H 3 2
R_factor 0.252 R_Free 0.308
crystal
cell
length a length b length c angle alpha angle beta angle gamma
85.430 85.430 1044.300 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.56 Å
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • xenobiotic transmembrane tra...


    • Primary referenceCrystal structure of the drug discharge outer membrane protein, OprM, of Pseudomonas aeruginosa: dual modes of membrane anchoring and occluded cavity end., Akama H, Kanemaki M, Yoshimura M, Tsukihara T, Kashiwagi T, Yoneyama H, Narita S, Nakagawa A, Nakae T, J Biol Chem 2004 Dec 17;279(51):52816-9. Epub 2004 Oct 26. PMID:15507433
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (139 Kb) [Save to disk]
  • Biological Unit Coordinates (1wp1.pdb1.gz) 205 Kb
  • Biological Unit Coordinates (1wp1.pdb2.gz) 187 Kb
  • CSU: Contacts of Structural Units for 1WP1
  • Likely Quarternary Molecular Structure file(s) for 1WP1
  • Structure Factors (387 Kb)
  • Retrieve 1WP1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1WP1 from S2C, [Save to disk]
  • Re-refined 1wp1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1WP1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1WP1
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1WP1, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1wp1a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1wp1b_, region B [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1wp1_B] [1wp1] [1wp1_A]
  • SWISS-PROT database: [Q51487]
  • Belongs to the resistance-nodulation-cell division (rnd) superfamily according to TCDB.
  • Domain organization of [OPRM_PSEAE] by SWISSPFAM
    • Other resources with information on 1WP1
  • Community annotation for 1WP1 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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