1WRM Hydrolase date Oct 22, 2004
title Crystal Structure Of Jsp-1
authors T.Yokota, A.Kashima, R.Kato, S.Sugio
compound source
Molecule: Dual Specificity Phosphatase 22
Chain: A
Fragment: Residues 1-163
Synonym: Lmw-Dsp2, Mitogen-Activated Protein Kinase Phospha Jnk-Stimulating Phosphatase 1;
Ec: 3.1.3.48
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 (De4)-Rp
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet32-A
symmetry Space Group: C 1 2 1
R_factor 0.251 R_Free 0.282
crystal
cell
length a length b length c angle alpha angle beta angle gamma
84.027 49.320 47.330 90.00 119.51 90.00
method X-Ray Diffractionresolution 1.50 Å
ligand MES enzyme Hydrolase E.C.3.1.3.48 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of human dual specificity phosphatase, JNK stimulatory phosphatase-1, at 1.5 A resolution., Yokota T, Nara Y, Kashima A, Matsubara K, Misawa S, Kato R, Sugio S, Proteins. 2007 Feb 1;66(2):272-8. PMID:17068812
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (31 Kb) [Save to disk]
  • Biological Unit Coordinates (1wrm.pdb1.gz) 27 Kb
  • LPC: Ligand-Protein Contacts for 1WRM
  • CSU: Contacts of Structural Units for 1WRM
  • Likely Quarternary Molecular Structure file(s) for 1WRM
  • Structure Factors (188 Kb)
  • Retrieve 1WRM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1WRM from S2C, [Save to disk]
  • Re-refined 1wrm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1WRM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1WRM
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1WRM, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1wrm_A] [1wrm]
  • SWISS-PROT database: [Q9NRW4]
  • Domain organization of [DUS22_HUMAN] by SWISSPFAM
  • Domain found in 1WRM: [DSPc ] by SMART
  • Other resources with information on 1WRM
  • Community annotation for 1WRM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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