1WTM Hydrolase date Nov 25, 2004
title X-Ray Structure Of Hew Lysozyme Orthorhombic Crystal Formed In The Earth'S Magnetic Field
authors S.Saijo, Y.Yamada, T.Sato, N.Tanaka, T.Matsui, G.Sazaki, K.Nakajima, Y.Matsuura
compound source
Molecule: Lysozyme C
Chain: A
Synonym: 1,4-Beta-N-Acetylmuramidase C, Allergen Gal D 4, Gal D Iv;
Ec: 3.2.1.17
Organism_scientific: Gallus Gallus
Organism_common: Chicken
Organism_taxid: 9031
Cell: Egg
Cellular_location: Cytoplasm(White)
symmetry Space Group: P 21 21 21
R_factor 0.173 R_Free 0.201
crystal
cell
length a length b length c angle alpha angle beta angle gamma
56.440 73.730 30.430 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.33 Å
ligand CL enzyme Hydrolase E.C.3.2.1.17 BRENDA
related structures by homologous chain: 135L, 193L
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural consequences of hen egg-white lysozyme orthorhombic crystal growth in a high magnetic field: validation of X-ray diffraction intensity, conformational energy searching and quantitative analysis of B factors and mosaicity., Saijo S, Yamada Y, Sato T, Tanaka N, Matsui T, Sazaki G, Nakajima K, Matsuura Y, Acta Crystallogr D Biol Crystallogr 2005 Mar;61(Pt 3):207-17. Epub 2005, Feb 24. PMID:15735330
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (27 Kb) [Save to disk]
  • Biological Unit Coordinates (1wtm.pdb1.gz) 23 Kb
  • LPC: Ligand-Protein Contacts for 1WTM
  • CSU: Contacts of Structural Units for 1WTM
  • Likely Quarternary Molecular Structure file(s) for 1WTM
  • Structure Factors (156 Kb)
  • Retrieve 1WTM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1WTM from S2C, [Save to disk]
  • Re-refined 1wtm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1WTM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1WTM
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Conformational Epitope Prediction for 1WTM from the CEP Server.
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1WTM, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1wtma_, region A [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1wtm_A] [1wtm]
  • SWISS-PROT database: [P00698]
  • Domain organization of [LYSC_CHICK] by SWISSPFAM
  • Domain found in 1WTM: [LYZ1 ] by SMART
  • Other resources with information on 1WTM
  • Community annotation for 1WTM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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