1WU1 Hydrolase date Nov 29, 2004
title Factor Xa In Complex With The Inhibitor 4-[(5-Chloroindol-2- Sulfonyl]-2-(2-Methylpropyl)-1-[[5-(Pyridin-4-Yl) Pyrimidin Yl]Carbonyl]Piperazine
authors M.Suzuki
compound source
Molecule: Coagulation Factor X, Heavy Chain
Chain: A
Fragment: Residues 16-243
Synonym: Stuart Factor, Stuart-Prower Factor
Ec: 3.4.21.6
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Coagulation Factor X, Light Chain
Chain: B
Fragment: Residues 85-138
Synonym: Stuart Factor, Stuart-Prower Factor
Ec: 3.4.21.6

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Other_details: Proteolytic Cleavage Product
symmetry Space Group: P 21 21 21
R_factor 0.189 R_Free 0.235
crystal
cell
length a length b length c angle alpha angle beta angle gamma
56.569 72.487 79.020 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand CA, D91 enzyme Hydrolase E.C.3.4.21.6 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceDesign, synthesis, and biological activity of non-basic compounds as factor Xa inhibitors: SAR study of S1 and aryl binding sites., Komoriya S, Haginoya N, Kobayashi S, Nagata T, Mochizuki A, Suzuki M, Yoshino T, Horino H, Nagahara T, Suzuki M, Isobe Y, Furugoori T, Bioorg Med Chem 2005 Jun 2;13(12):3927-54. PMID:15911309
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (53 Kb) [Save to disk]
  • Biological Unit Coordinates (1wu1.pdb1.gz) 47 Kb
  • LPC: Ligand-Protein Contacts for 1WU1
  • CSU: Contacts of Structural Units for 1WU1
  • Likely Quarternary Molecular Structure file(s) for 1WU1
  • Retrieve 1WU1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1WU1 from S2C, [Save to disk]
  • View 1WU1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1WU1
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1WU1, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1wu1_A] [1wu1_B] [1wu1]
  • SWISS-PROT database: [P00742]
  • Domain organization of [FA10_HUMAN] by SWISSPFAM
  • Domains found in 1WU1: [EGF_CA] [EGF_like] [Tryp_SPc ] by SMART
  • Other resources with information on 1WU1
  • Community annotation for 1WU1 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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