1WUE Structural Genomics, Unknown Function date Dec 05, 2004
title Crystal Structure Of Protein Gi:29375081, Unknown Member Of Superfamily From Enterococcus Faecalis V583
authors A.A.Fedorov, E.V.Fedorov, W.S.Yew, J.A.Gerlt, S.C.Almo, S.K.Burle York Sgx Research Center For Structural Genomics (Nysgxrc)
compound source
Molecule: Mandelate Racemasemuconate Lactonizing Enzyme Fa Protein;
Chain: A, B
Fragment: Residues 20-367(Database Sequence)
Engineered: Yes
 Organism_scientific: Enterococcus Faecalis
Organism_taxid: 226185
Strain: V583
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: H 3
R_factor 0.207 R_Free 0.242
crystal
cell
length a length b length c angle alpha angle beta angle gamma
136.807 136.807 112.771 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.10 Å
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceLoss of quaternary structure is associated with rapid sequence divergence in the OSBS family., Odokonyero D, Sakai A, Patskovsky Y, Malashkevich VN, Fedorov AA, Bonanno JB, Fedorov EV, Toro R, Agarwal R, Wang C, Ozerova ND, Yew WS, Sauder JM, Swaminathan S, Burley SK, Almo SC, Glasner ME, Proc Natl Acad Sci U S A. 2014 May 28. pii: 201318703. PMID:24872444
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (130 Kb) [Save to disk]
  • Biological Unit Coordinates (1wue.pdb1.gz) 125 Kb
  • CSU: Contacts of Structural Units for 1WUE
  • Likely Quarternary Molecular Structure file(s) for 1WUE
  • Structure Factors (679 Kb)
  • Retrieve 1WUE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1WUE from S2C, [Save to disk]
  • Re-refined 1wue structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1WUE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1WUE
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1WUE, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1wuea2, region A:1001-1126 [Jmol] [rasmolscript] [script source]
        - Domain d1wuea1, region A:1127-1367 [Jmol] [rasmolscript] [script source]
        - Domain d1wueb2, region B:2001-2126 [Jmol] [rasmolscript] [script source]
        - Domain d1wueb1, region B:2127-2367 [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1wue_A] [1wue] [1wue_B]
  • SWISS-PROT database: [Q838J7]
  • Domain organization of [Q838J7_ENTFA] by SWISSPFAM
  • Domain found in 1WUE: [MR_MLE ] by SMART
    • Other resources with information on 1WUE
  • Community annotation for 1WUE at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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